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Toy examples for the simple, weighted, peak data sets.

Mode:

Paste a list of sequences in a textarea or select a file with sequences to scan

Sequence set in extended multi-fasta format:

> 1 example data: 48 Drosophila bicoid footprints
CCGATCGAAGGGATTATAATTCC
> 2
GTACTAATTAAGCATGGCTCAAG
> 3
TGGGCGGATTTGCATATGG
> 4
GCGTCGGATTTGCAGCCAT
> 5
TGGCCAAAGGATTTGTCCGTGGG
> 6
TTTCCTCCGGCTTATCGAAGAT
> 7
ATTGCAAGCCGTTTTTCAGGGG
> 8
GCCGTGTTAATCCGTTTGC
> 9
TCAGCGAGATTATTAGTCA
> 10
TGGACTATAATCGCACAAC
> 11
TTGCTGGGATTAGCCAAGG
> 12
ATGTCGAAGGGATTAGGGGCG
> 13
CCTACCTTCAGAAACGGATTAAATTTTTTCAGAC
> 14
AGACAAATAATCCAGCCTTAAGCATGGTGATTAAGCTTGATCCC
> 15
ATATTGACGGATTTTCCTTAAATCCCTCTGTTAATCTCCGGCTTAGAGCGCGAC
> 16
AACTGAACTAAATCCGGCTTAGGATTCTTGCGTCA
> 17
AACCAGTCAATCTGGACTA
> 18
CTATCAAGATTAAAAGATT
> 19
GACTAATGATCAACTTTAA
> 20
CCACCTTTAGCCTTGACAA
> 21
CCTTGACAAATCGCCGTGG
> 22
CTCTACTTAAGCCGAAAAA
> 23
AAAGCAAGACTAATTTTTA
> 24
GTTTTTTAAGCCTTTCT
> 25
GGCAAAAGGCTTAAAAAACA
> 26
CCAAAAAGTCAAATGCG
> 27
CTAGGATAATCTGCAGCTTAGGTAAGCTGATCCCGCGATTAGGTAACG
> 28
GTAACGAAATCGCTGGCTTAGGTACCC
> 29
ACGCGTCAAGGGATTAGATGGGC
> 30
CACGGATCGCGGATTGAGGATTGC
> 31
ATCCATTCTGGATTAGAGCAGAAA
> 32
ACAAAAAATTATGCGC
> 33
GGATTTGGATGATCCGGGA
> 34
CCGGGAGCTTAGCGGATGG
> 35
TGGCCAGCTTAGCAGCGAG
> 36
GGTTTTCTATGGGGATTACGTTGGT
> 37
GAGTACTTGGGATTAAAGGTGATTATGACA
> 38
ATCAGTCATCAGATTAGCATGAA
> 39
TTGTATTTAAATCCGTTTTGATCCTC
> 40
GTTTGTGGCTTAACTTTTGCCTCT
> 41
TCTAAAATCCGTAATCTGCTTAAGC
> 42
AGCGGCGAGCTTAAGTCGAGGAATC
> 43
GGACCAAGCGAGATTAGAGGCACTG
> 44
CACTTGAATCCTAAAGGCTCTCAAA
> 45
AGGCAACGCCTAATCTGGCTCAGCC
> 46
TACTTTAAAATAATTTTATTTATTA
> 47
TTATAAAAATTATTATTAAAAACGCAATCTGAGCTCCGC
> 48
CTAAGAAATGCAAATATTTGTTTTTTATTT

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Motif shape prior:

Background dinucleotide composition:

De novo dinucleotide motif discovery in nucleotide sequences.

Click a field in the form on the left to get a hint