MACRO-APE
Compare two motifs
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Description
PERFECTOS-APE
rSNP TFBS annotation
Description
ChIPMunk
Motif discovery
Dinucleotide motif discovery
Description
Databases
HOCOMOCO – collection of TFBS motifs
EpiFactors – database for epigenetic regulators
ADASTRA – database of allele-specific TF binding sites
Contacts
Ticket number:
Paste a list of sequences with SNPs in a textarea or select a file with sequences to scan
SNPs with flanking sequences (at least 25 nucleotides from each side):
rs10040172 gatttgccctgattgcagttactga[G/A]tggtacagacatcgtaataatctta rs10116271 taaattctatgtggggaagaggtct[C/T]gtagaggcgatgattcttacattgc rs10208293 cttcatacatttatgtccagtacct[A/G]tggaccctccttgtgaactcttctc rs10431961 tggcggggctggtcaggcggcgtcg[C/T]cggtacgctctgagcggcagcgtgt
or load a file with SNP-sequences:
TFBS motif collection:
HOCOMOCO-13 (H13CORE)
HOCOMOCO-13 (H13RSNP)
HOCOMOCO-13 (H13RSNP-HQ)
HOCOMOCO-13 (H13INVIVO)
HOCOMOCO-13 (H13INVITRO)
HOCOMOCO-12 (H12CORE)
HOCOMOCO-12 (H12RSNP)
HOCOMOCO-12 (H12RSNP-HQ)
HOCOMOCO-12 (H12INVIVO)
HOCOMOCO-12 (H12INVITRO)
HOCOMOCO-11 (human)
HOCOMOCO-11 (mouse)
JASPAR
HT-SELEX
SwissRegulon
HOMER
Advanced options:
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P-value cutoff:
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Fold change cutoff:
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Find TFBS motifs binding alleles of a single-nucleotide variant with different affinity.
Click a field in the form on the left to get a hint
