We, Russian scientists of the
autosome
team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
MACRO-APE
Compare two motifs
Find similar motif
Description
PERFECTOS-APE
rSNP TFBS annotation
Description
ChIPMunk
Motif discovery
Dinucleotide motif discovery
Description
Databases
HOCOMOCO – collection of TFBS motifs
EpiFactors – database for epigenetic regulators
ADASTRA – database of allele-specific TF binding sites
Contacts
Ticket number:
Paste a list of sequences with SNPs in a textarea or select a file with sequences to scan
SNPs with flanking sequences (at least 25 nucleotides from each side):
rs10040172 gatttgccctgattgcagttactga[G/A]tggtacagacatcgtaataatctta rs10116271 taaattctatgtggggaagaggtct[C/T]gtagaggcgatgattcttacattgc rs10208293 cttcatacatttatgtccagtacct[A/G]tggaccctccttgtgaactcttctc rs10431961 tggcggggctggtcaggcggcgtcg[C/T]cggtacgctctgagcggcagcgtgt
or load a file with SNP-sequences:
TFBS motif collection:
HOCOMOCO-11 (human)
HOCOMOCO-11 (mouse)
JASPAR
HT-SELEX
SwissRegulon
HOMER
Advanced options:
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P-value cutoff:
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Fold change cutoff:
Reset
Find TFBS motifs binding alleles of a single-nucleotide variant with different affinity.
Click a field in the form on the left to get a hint