MACRO-APE
Compare two motifs
Find similar motif
Description
PERFECTOS-APE
rSNP TFBS annotation
Description
ChIPMunk
Motif discovery
Dinucleotide motif discovery
Description
Databases
HOCOMOCO – collection of TFBS motifs
EpiFactors – database for epigenetic regulators
ADASTRA – database of allele-specific TF binding sites
Contacts
Ticket number:
Toy examples for the
PCM-to-PCM
,
PWM-to-PWM
,
PPM-to-PPM
and
different types
comparison.
Model 1:
PWM
PCM
PPM
Matrix 1:
>motif_1 1234 93 1037 1258 264 5 3348 5 76 7 3530 9 58 18 3521 25 518 1547 22 1535 138 9 3457 18 115 82 1862 1563 228 43 3279 72 110 134 3163 215 239 2226 402 755
Model 2:
PWM
PCM
PPM
Matrix 2:
>motif_2 682.64 443.15 2075.66 287.21 299.89 103.74 2613.89 471.13 591.49 42.63 2845.17 9.37 7.07 45.29 3432.88 3.41 91.31 19.153 3373.66 4.54 809.21 2246.94 61.31 371.2 120.56 42.43 3242.16 83.5 13.73 35.86 3332.41 106.67 558.12 90.01 2694.85 145.67 264.01 254.72 2796.88 173.05 519.46 1874.93 654.54 439.72
Advanced options:
[+]
*
P-value:
P-value boundary:
Lower
Upper
Background:
None: exact word counts
GC-content
Frequencies
GC-content:
A:
C:
G:
T:
*
Discretization:
Pseudocount (model 1):
Effective sample size (model 1):
Pseudocount (model 2):
Effective sample size (model 2):
Reset
Evaluate Jaccard similarity between two TFBS models (motifs).
Click a field in the form on the left to get a hint
