We, Russian scientists of the
autosome
team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
MACRO-APE
Compare two motifs
Find similar motif
Description
PERFECTOS-APE
rSNP TFBS annotation
Description
ChIPMunk
Motif discovery
Dinucleotide motif discovery
Description
Databases
HOCOMOCO – collection of TFBS motifs
EpiFactors – database for epigenetic regulators
ADASTRA – database of allele-specific TF binding sites
Contacts
Ticket number:
Toy examples for the
PCM
,
PWM
and
PPM
scanning.
Data model:
PWM
PCM
PPM
Query matrix:
>motif_1 1234 93 1037 1258 264 5 3348 5 76 7 3530 9 58 18 3521 25 518 1547 22 1535 138 9 3457 18 115 82 1862 1563 228 43 3279 72 110 134 3163 215 239 2226 402 755
Collection:
HOCOMOCO-11 (human)
HOCOMOCO-11 (mouse)
JASPAR
HT-SELEX
SwissRegulon
HOMER
Advanced options:
[+]
Query background:
None: exact word counts
GC-content
Frequencies
GC-content:
A:
C:
G:
T:
*
P-value:
P-value boundary:
Lower
Upper
*
Similarity cutoff:
*
Minimal similarity to recalculate in precise mode:
Pseudocount:
Effective count:
Reset
Scan a collection for TFBS models (motifs) similar to a given query.
Click a field in the form on the left to get a hint