MACRO-APE
Compare two motifs
Find similar motif
Description
PERFECTOS-APE
rSNP TFBS annotation
Description
ChIPMunk
Motif discovery
Dinucleotide motif discovery
Description
Databases
HOCOMOCO – collection of TFBS motifs
EpiFactors – database for epigenetic regulators
ADASTRA – database of allele-specific TF binding sites
Contacts
Ticket number:
Toy examples for the
simple
,
weighted
,
peak
data sets.
Mode:
Simple
Peak
Weighted
Single strand (RNA)
Paste a list of sequences in a textarea or select a file with sequences to scan
Sequence set in extended multi-fasta format:
> 10.0 GTGACGGTAGTCGATTACCCCGTGACTGTGAGC > 5.0 CCCCCCCTTACCCCAGTGATAA > 10.0 AAAAAAAAAAAAAAAAAAAAAAAAAA > 2.0 CCCCCCCCCCCCCCCCCCCCCCCC
or load a file with sequences:
Advanced options:
[+]
Speed mode:
Fast
Precise
Minimal motif length:
Maximal motif length:
Occurences per sequence:
OOPS
ZOOPS
Motif shape prior:
flat
single
double
Background GC percent:
Uniform
Auto-detect
Reset
De novo motif discovery in nucleotide sequences.
Click a field in the form on the left to get a hint
