MACRO-APE
Compare two motifs
Find similar motif
Description
PERFECTOS-APE
rSNP TFBS annotation
Description
ChIPMunk
Motif discovery
Dinucleotide motif discovery
Description
Databases
HOCOMOCO – collection of TFBS motifs
EpiFactors – database for epigenetic regulators
ADASTRA – database of allele-specific TF binding sites
Contacts
Ticket number:
Toy examples for the
PCM
,
PWM
and
PPM
scanning.
Data model:
PWM
PCM
PPM
Query matrix:
>motif_1 0.341 0.026 0.286 0.347 0.074 0.001 0.924 0.001 0.021 0.002 0.975 0.002 0.016 0.005 0.972 0.007 0.143 0.427 0.006 0.424 0.038 0.003 0.954 0.005 0.032 0.023 0.514 0.431 0.063 0.012 0.905 0.02 0.031 0.037 0.873 0.059 0.066 0.615 0.111 0.208
Collection:
HOCOMOCO-12 (H12CORE)
HOCOMOCO-12 (H12RSNP)
HOCOMOCO-12 (H12RSNP-HQ)
HOCOMOCO-12 (H12INVIVO)
HOCOMOCO-12 (H12INVITRO)
HOCOMOCO-11 (human)
HOCOMOCO-11 (mouse)
JASPAR
HT-SELEX
SwissRegulon
HOMER
Advanced options:
[+]
Query background:
None: exact word counts
GC-content
Frequencies
GC-content:
A:
C:
G:
T:
*
P-value:
P-value boundary:
Lower
Upper
*
Similarity cutoff:
*
Minimal similarity to recalculate in precise mode:
Pseudocount:
Effective count:
Reset
Scan a collection for TFBS models (motifs) similar to a given query.
Click a field in the form on the left to get a hint
