MACRO-APE
Compare two motifs
Find similar motif
Description
PERFECTOS-APE
rSNP TFBS annotation
Description
ChIPMunk
Motif discovery
Dinucleotide motif discovery
Description
Databases
HOCOMOCO – collection of TFBS motifs
EpiFactors – database for epigenetic regulators
ADASTRA – database of allele-specific TF binding sites
Contacts
Ticket number:
Toy examples for the
PCM-to-PCM
,
PWM-to-PWM
,
PPM-to-PPM
and
different types
comparison.
Model 1:
PWM
PCM
PPM
Matrix 1:
>motif_1 1234 93 1037 1258 264 5 3348 5 76 7 3530 9 58 18 3521 25 518 1547 22 1535 138 9 3457 18 115 82 1862 1563 228 43 3279 72 110 134 3163 215 239 2226 402 755
Model 2:
PWM
PCM
PPM
Matrix 2:
>motif_2 -0.244 -0.674 0.865 -1.106 -1.063 -2.111 1.096 -0.613 -0.387 -2.974 1.18 -4.338 -4.564 -2.916 1.368 -5.077 -2.236 -3.719 1.351 -4.889 -0.074 0.944 -2.624 -0.851 -1.964 -2.978 1.311 -2.324 -4.015 -3.138 1.338 -2.084 -0.445 -2.25 1.126 -1.778 -1.189 -1.225 1.163 -1.608 -0.516 0.764 -0.286 -0.682
Advanced options:
[+]
*
P-value:
P-value boundary:
Lower
Upper
Background:
None: exact word counts
GC-content
Frequencies
GC-content:
A:
C:
G:
T:
*
Discretization:
Pseudocount (model 1):
Effective sample size (model 1):
Pseudocount (model 2):
Effective sample size (model 2):
Reset
Evaluate Jaccard similarity between two TFBS models (motifs).
Click a field in the form on the left to get a hint
