MACRO-APE
Compare two motifs
Find similar motif
Description
PERFECTOS-APE
rSNP TFBS annotation
Description
ChIPMunk
Motif discovery
Dinucleotide motif discovery
Description
Databases
HOCOMOCO – collection of TFBS motifs
EpiFactors – database for epigenetic regulators
ADASTRA – database of allele-specific TF binding sites
Contacts
Ticket number:
Toy examples for the
PCM-to-PCM
,
PWM-to-PWM
,
PPM-to-PPM
and
different types
comparison.
Model 1:
PWM
PCM
PPM
Matrix 1:
>motif_1 0.308 -2.254 0.135 0.328 -1.227 -4.814 1.305 -4.908 -2.443 -4.648 1.358 -4.441 -2.717 -3.807 1.356 -3.504 -0.556 0.534 -3.614 0.527 -1.868 -4.381 1.337 -3.815 -2.045 -2.384 0.719 0.544 -1.373 -3.006 1.285 -2.502 -2.103 -1.894 1.249 -1.428 -1.327 0.898 -0.808 -0.181
Model 2:
PWM
PCM
PPM
Matrix 2:
>motif_2 -0.244 -0.674 0.865 -1.106 -1.063 -2.111 1.096 -0.613 -0.387 -2.974 1.18 -4.338 -4.564 -2.916 1.368 -5.077 -2.236 -3.719 1.351 -4.889 -0.074 0.944 -2.624 -0.851 -1.964 -2.978 1.311 -2.324 -4.015 -3.138 1.338 -2.084 -0.445 -2.25 1.126 -1.778 -1.189 -1.225 1.163 -1.608 -0.516 0.764 -0.286 -0.682
Advanced options:
[+]
*
P-value:
P-value boundary:
Lower
Upper
Background:
None: exact word counts
GC-content
Frequencies
GC-content:
A:
C:
G:
T:
*
Discretization:
Pseudocount (model 1):
Effective sample size (model 1):
Pseudocount (model 2):
Effective sample size (model 2):
Reset
Evaluate Jaccard similarity between two TFBS models (motifs).
Click a field in the form on the left to get a hint
