We, Russian scientists of the
autosome
team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
MACRO-APE
Compare two motifs
Find similar motif
Description
PERFECTOS-APE
rSNP TFBS annotation
Description
ChIPMunk
Motif discovery
Dinucleotide motif discovery
Description
Databases
HOCOMOCO – collection of TFBS motifs
EpiFactors – database for epigenetic regulators
ADASTRA – database of allele-specific TF binding sites
Contacts
Ticket number:
Toy examples for the
PCM-to-PCM
,
PWM-to-PWM
,
PPM-to-PPM
and
different types
comparison.
Model 1:
PWM
PCM
PPM
Matrix 1:
>motif_1 0.308 -2.254 0.135 0.328 -1.227 -4.814 1.305 -4.908 -2.443 -4.648 1.358 -4.441 -2.717 -3.807 1.356 -3.504 -0.556 0.534 -3.614 0.527 -1.868 -4.381 1.337 -3.815 -2.045 -2.384 0.719 0.544 -1.373 -3.006 1.285 -2.502 -2.103 -1.894 1.249 -1.428 -1.327 0.898 -0.808 -0.181
Model 2:
PWM
PCM
PPM
Matrix 2:
>motif_2 -0.244 -0.674 0.865 -1.106 -1.063 -2.111 1.096 -0.613 -0.387 -2.974 1.18 -4.338 -4.564 -2.916 1.368 -5.077 -2.236 -3.719 1.351 -4.889 -0.074 0.944 -2.624 -0.851 -1.964 -2.978 1.311 -2.324 -4.015 -3.138 1.338 -2.084 -0.445 -2.25 1.126 -1.778 -1.189 -1.225 1.163 -1.608 -0.516 0.764 -0.286 -0.682
Advanced options:
[+]
*
P-value:
P-value boundary:
Lower
Upper
Background:
None: exact word counts
GC-content
Frequencies
GC-content:
A:
C:
G:
T:
*
Discretization:
Pseudocount (model 1):
Effective sample size (model 1):
Pseudocount (model 2):
Effective sample size (model 2):
Reset
Evaluate Jaccard similarity between two TFBS models (motifs).
Click a field in the form on the left to get a hint